Volume 4,Issue 6
Integrating Computer-Aided and AI-Driven Drug Design into Medicinal Chemistry Education: A Computational Course on EGFR L858R/V948R-Targeted Oral Anti-Lung Cancer Agents
The traditional medicinal chemistry education suffers from the high barrier of equipment and the teaching of modern computational methods. To solve this, we designed an AI-assisted computational drug design course, “Design of Oral Anti-Lung Cancer Drugs Targeting EGFR L858R/V948R,” for pharmacy undergraduates. The course focuses mainly on a resistant mutation in NSCLC and employs a structured workflow with several software tools such as Schrödinger, PyMOL, MolSnapper, Pipeline Pilot and GROMACS. Through 16 class hours, students can complete the closed-loop learning experience from target selection to candidate compound confirmation. In summary, this course is helpful for technical barriers, encourages students to form an interdisciplinary thinking consciousness, and provides a transferable model for the modernization of hands-on medicinal chemistry education.
[1] Gioiello A, Piccinno A, Lozza A, et al., 2020, The Medicinal Chemistry in the Era of Machines and Automation: Recent Advances in Continuous Flow Technology. J. Med. Chem., 63: 6624–6647.
[2] You Q, Yao W, Xi X, et al., 2019, Problems and Countermeasures for Innovative Pharmaceutical Talents Training. Strategic Study of CAE, 21: 79–83.
[3] Wilson Fetrow M, Svihla V, Burnside B, et al., 2023, Course Based Undergraduate Research Experiences in a Chemical Engineering Laboratory Promote Consequential Agency. J. Chem. Educ., 100: 3752–3763.
[4] Ziv Y, Imrie F, Marsden B, et al., 2025, MolSnapper: Conditioning Diffusion for Structure Based Drug Design. J. Chem. Inf. Model., 65: 4263–4273.
[5] Hess B, Kutzner C, van der Spoel D, et al., 2008, GROMACS 4: Algorithms for Highly Efficient, Load Balanced, and Scalable Molecular Simulation. J. Chem. Theory Comput., 4: 435–447.
[6] Abramson J, Adler J, Dunger J, et al., 2024, Accurate Structure Prediction of Biomolecular Interactions with AlphaFold 3. Nature, 630: 493–500.
[7] Eberhardt J, Santos Martins D, Tillack A, et al., 2021, AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings. J. Chem. Inf. Model., 61: 3891–3898.
[8] Dassault Systèmes BIOVIA, 2019, Discovery Studio Modeling Environment, release 2019, Dassault Systèmes, France.
[9] Meng E, Goddard T, Pettersen E, et al., 2023, UCSF ChimeraX: Tools for Structure Building and Analysis. Protein Sci., 32: e4792.
[10] Schake P, Bolz S, Linnemann K, et al., 2025, PLIP 2025: Introducing Protein–Protein Interactions to the Protein–Ligand Interaction Profiler. Nucleic Acids Res., 53: W463–W465.
[11] Chen S, Zhang O, Jiang C, et al., 2025, Deep Lead Optimization Enveloped in Protein Pocket and Its Application in Designing Potent and Selective Ligands Targeting LTK Protein. Nat. Mach. Intell., 7: 1–15.
[12] Case DA, Aktulga HM, Belfon K, et al., 2023, AmberTools. J. Chem. Inf. Model., 63: 6183–6191.
[13] Thompson AP, Aktulga HM, Berger R, et al., 2022, LAMMPS – A Flexible Simulation Tool for Particle Based Materials Modeling at the Atomic, Meso, and Continuum Scales. Comput. Phys. Commun., 271: 108171.
[14] Li H, Zheng M, 2021, Artificial Intelligence and Drug Design. Science Press, Beijing.
[15] Hu J, et al., 2020, Computer Aided Drug Design: Theory and Applications. Chemical Industry Press, Shanghai.
[16] Schneuing A, Harris C, Du Y, et al., 2024, Structure Based Drug Design with Equivariant Diffusion Models. Nat. Comput. Sci., 4: 899–909.